IL_4YPB_166
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 4YPB|1|RA|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_166 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.0756
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4YPB|1|RA|U|2636
4YPB|1|RA|U|2637
4YPB|1|RA|G|2638
4YPB|1|RA|A|2639
4YPB|1|RA|G|2640
*
4YPB|1|RA|C|2774
4YPB|1|RA|A|2775
4YPB|1|RA|A|2776
4YPB|1|RA|G|2777
4YPB|1|RA|A|2778
4YPB|1|RA|U|2779
4YPB|1|RA|G|2780
4YPB|1|RA|A|2781
4YPB|1|RA|G|2782
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RE
- 50S ribosomal protein L3
- Chain RN
- 50S ribosomal protein L13
Coloring options: