IL_4YPB_169
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUCC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4YPB|1|RA|U|2689, 4YPB|1|RA|C|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_169 not in the Motif Atlas
- Homologous match to IL_7RQB_105
- Geometric discrepancy: 0.0827
- The information below is about IL_7RQB_105
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_08296.3
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
4YPB|1|RA|U|2687
4YPB|1|RA|U|2688
4YPB|1|RA|U|2689
4YPB|1|RA|C|2690
4YPB|1|RA|C|2691
*
4YPB|1|RA|G|2718
4YPB|1|RA|G|2719
4YPB|1|RA|U|2720
4YPB|1|RA|A|2721
4YPB|1|RA|G|2722
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain RE
- 50S ribosomal protein L3
- Chain RR
- 50S ribosomal protein L17
- Chain RT
- 50S ribosomal protein L19
Coloring options: