IL_4YPB_194

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_194 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1271

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

4YPB|1|XA|G|371
4YPB|1|XA|C|372
4YPB|1|XA|A|373
4YPB|1|XA|A|374
4YPB|1|XA|U|375
*
4YPB|1|XA|A|389
4YPB|1|XA|C|390

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16