IL_4YPB_223
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GG*UCAGC
- Length
- 7 nucleotides
- Bulged bases
- 4YPB|1|XA|C|1200, 4YPB|1|XA|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_223 not in the Motif Atlas
- Homologous match to IL_4LFB_045
- Geometric discrepancy: 0.0816
- The information below is about IL_4LFB_045
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
4YPB|1|XA|G|1057
4YPB|1|XA|G|1058
*
4YPB|1|XA|U|1199
4YPB|1|XA|C|1200
4YPB|1|XA|A|1201
4YPB|1|XA|G|1202
4YPB|1|XA|C|1203
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XC
- 30S ribosomal protein S3
- Chain XJ
- 30S ribosomal protein S10
- Chain XN
- 30S ribosomal protein S14
Coloring options: