IL_4YPB_223

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4YPB|1|XA|C|1200, 4YPB|1|XA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_223 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.0816

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4YPB|1|XA|G|1057
4YPB|1|XA|G|1058
*
4YPB|1|XA|U|1199
4YPB|1|XA|C|1200
4YPB|1|XA|A|1201
4YPB|1|XA|G|1202
4YPB|1|XA|C|1203

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14