IL_4YPB_230
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UACAAAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- 4YPB|1|XA|A|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_230 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1217
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4YPB|1|XA|U|1247
4YPB|1|XA|A|1248
4YPB|1|XA|C|1249
4YPB|1|XA|A|1250
4YPB|1|XA|A|1251
4YPB|1|XA|A|1252
4YPB|1|XA|G|1253
*
4YPB|1|XA|C|1284
4YPB|1|XA|A|1285
4YPB|1|XA|A|1286
4YPB|1|XA|A|1287
4YPB|1|XA|A|1288
4YPB|1|XA|A|1289
4YPB|1|XA|G|1290
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XG
- 30S ribosomal protein S7
- Chain XI
- 30S ribosomal protein S9
- Chain XJ
- 30S ribosomal protein S10
- Chain XN
- 30S ribosomal protein S14
- Chain XU
- 30S ribosomal protein Thx
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