3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
4YPB|1|XA|A|1286
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YPB_230 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.1217
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

4YPB|1|XA|U|1247
4YPB|1|XA|A|1248
4YPB|1|XA|C|1249
4YPB|1|XA|A|1250
4YPB|1|XA|A|1251
4YPB|1|XA|A|1252
4YPB|1|XA|G|1253
*
4YPB|1|XA|C|1284
4YPB|1|XA|A|1285
4YPB|1|XA|A|1286
4YPB|1|XA|A|1287
4YPB|1|XA|A|1288
4YPB|1|XA|A|1289
4YPB|1|XA|G|1290

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XG
30S ribosomal protein S7
Chain XI
30S ribosomal protein S9
Chain XJ
30S ribosomal protein S10
Chain XN
30S ribosomal protein S14
Chain XU
30S ribosomal protein Thx

Coloring options:


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