IL_4YPB_234

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_234 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1258

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4YPB|1|XA|C|1303
4YPB|1|XA|G|1304
4YPB|1|XA|G|1305
4YPB|1|XA|A|1306
4YPB|1|XA|U|1307
4YPB|1|XA|U|1308
*
4YPB|1|XA|A|1329
4YPB|1|XA|U|1330
4YPB|1|XA|G|1331
4YPB|1|XA|A|1332
4YPB|1|XA|A|1333
4YPB|1|XA|G|1334

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein Thx