IL_4YPB_256

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4YPB|1|YA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_256 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1167

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4YPB|1|YA|C|280
4YPB|1|YA|G|281
4YPB|1|YA|A|282
4YPB|1|YA|A|283
4YPB|1|YA|U|284
*
4YPB|1|YA|A|357
4YPB|1|YA|U|358
4YPB|1|YA|A|359
4YPB|1|YA|G|360

Current chains

Chain YA

23S rRNA

Nearby chains