IL_4YPB_284
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4YPB|1|YA|U|1026, 4YPB|1|YA|A|1127, 4YPB|1|YA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_284 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0557
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4YPB|1|YA|G|1024
4YPB|1|YA|G|1025
4YPB|1|YA|U|1026
4YPB|1|YA|A|1027
4YPB|1|YA|A|1028
4YPB|1|YA|A|1029
4YPB|1|YA|G|1030
*
4YPB|1|YA|C|1124
4YPB|1|YA|G|1125
4YPB|1|YA|A|1126
4YPB|1|YA|A|1127
4YPB|1|YA|A|1128
4YPB|1|YA|A|1129
4YPB|1|YA|U|1130
4YPB|1|YA|G|1131
4YPB|1|YA|A|1132
4YPB|1|YA|U|1133
4YPB|1|YA|C|1135
4YPB|1|YA|G|1136
4YPB|1|YA|G|1137
4YPB|1|YA|G|1138
4YPB|1|YA|G|1139
4YPB|1|YA|C|1140
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y9
- 50S ribosomal protein L36
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YE
- 50S ribosomal protein L3
- Chain YN
- 50S ribosomal protein L13
- Chain YQ
- 50S ribosomal protein L16
Coloring options: