IL_4YPB_289

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4YPB|1|YA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_289 not in the Motif Atlas

Geometric match to IL_5B2P_002

Geometric discrepancy: 0.284

The information below is about IL_5B2P_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4YPB|1|YA|G|1087
4YPB|1|YA|A|1088
4YPB|1|YA|G|1089
4YPB|1|YA|U|1090
4YPB|1|YA|G|1091
*
4YPB|1|YA|C|1100
4YPB|1|YA|U|1101
4YPB|1|YA|C|1102

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36