IL_4YPB_301

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

4YPB|1|YA|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_301 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0972

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4YPB|1|YA|C|1417
4YPB|1|YA|G|1418
4YPB|1|YA|A|1419
4YPB|1|YA|U|1420
4YPB|1|YA|G|1421
*
4YPB|1|YA|C|1577
4YPB|1|YA|U|1578
4YPB|1|YA|A|1579
4YPB|1|YA|A|1580
4YPB|1|YA|G|1581

Current chains

Chain YA

23S rRNA

Nearby chains