IL_4YPB_317
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_317 not in the Motif Atlas
- Homologous match to IL_7RQB_074
- Geometric discrepancy: 0.1309
- The information below is about IL_7RQB_074
- Detailed Annotation
- UAA/GAN with extra stack
- Broad Annotation
- No text annotation
- Motif group
- IL_90318.1
- Basepair signature
- cWW-tSH-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4YPB|1|YA|U|1851
4YPB|1|YA|C|1852
4YPB|1|YA|A|1853
4YPB|1|YA|A|1854
4YPB|1|YA|G|1855
*
4YPB|1|YA|C|1887
4YPB|1|YA|G|1888
4YPB|1|YA|A|1889
4YPB|1|YA|A|1890
4YPB|1|YA|G|1891
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XW
- Transfer RNA; tRNA
- Chain Y1
- 50S ribosomal protein L28
- Chain YD
- 50S ribosomal protein L2
Coloring options: