3D structure

PDB id
4YPB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
4YPB|1|YA|A|1938, 4YPB|1|YA|U|1944, 4YPB|1|YA|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YPB_320 not in the Motif Atlas
Homologous match to IL_4WF9_077
Geometric discrepancy: 0.1082
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

4YPB|1|YA|C|1934
4YPB|1|YA|G|1935
4YPB|1|YA|A|1936
4YPB|1|YA|A|1937
4YPB|1|YA|A|1938
4YPB|1|YA|U|1939
4YPB|1|YA|U|1940
4YPB|1|YA|C|1941
4YPB|1|YA|C|1942
4YPB|1|YA|U|1943
4YPB|1|YA|U|1944
4YPB|1|YA|G|1945
*
4YPB|1|YA|C|1961
4YPB|1|YA|C|1962
4YPB|1|YA|U|1963
4YPB|1|YA|G|1964

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YD
50S ribosomal protein L2

Coloring options:


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