IL_4YPB_328
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCG*CGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GCG,CGC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_328 not in the Motif Atlas
- Geometric match to IL_4LFB_061
- Geometric discrepancy: 0.1968
- The information below is about IL_4LFB_061
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
4YPB|1|YA|G|2104
4YPB|1|YA|C|2105
4YPB|1|YA|G|2106
*
4YPB|1|YA|C|2183
4YPB|1|YA|G|2184
4YPB|1|YA|C|2185
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XK
- 30S ribosomal protein S11
Coloring options: