IL_4YPB_329
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGCGUAGGAUAG*CCUG
- Length
- 17 nucleotides
- Bulged bases
- 4YPB|1|YA|U|2113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_329 not in the Motif Atlas
- Geometric match to IL_4K27_002
- Geometric discrepancy: 0.3783
- The information below is about IL_4K27_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
4YPB|1|YA|C|2108
4YPB|1|YA|U|2109
4YPB|1|YA|G|2110
4YPB|1|YA|C|2111
4YPB|1|YA|G|2112
4YPB|1|YA|U|2113
4YPB|1|YA|A|2114
4YPB|1|YA|G|2115
4YPB|1|YA|G|2116
4YPB|1|YA|A|2117
4YPB|1|YA|U|2118
4YPB|1|YA|A|2119
4YPB|1|YA|G|2120
*
4YPB|1|YA|C|2178
4YPB|1|YA|C|2179
4YPB|1|YA|U|2180
4YPB|1|YA|G|2181
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XW
- Transfer RNA; tRNA
Coloring options: