IL_4YPB_345

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAA,UUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_345 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1712

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4YPB|1|YA|G|2588
4YPB|1|YA|A|2589
4YPB|1|YA|A|2590
*
4YPB|1|YA|U|2604
4YPB|1|YA|U|2605
4YPB|1|YA|C|2606

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain YD

50S ribosomal protein L2