IL_4YPB_372
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- ACGUGGCUACCUGCGAUAAGC*GAUGU
- Length
- 26 nucleotides
- Bulged bases
- 4YPB|1|YA|U|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YPB_372 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.2083
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
4YPB|1|YA|A|56
4YPB|1|YA|C|57
4YPB|1|YA|G|58
4YPB|1|YA|U|59
4YPB|1|YA|G|60
4YPB|1|YA|G|61
4YPB|1|YA|C|62
4YPB|1|YA|U|63
4YPB|1|YA|A|64
4YPB|1|YA|C|65
4YPB|1|YA|C|66
4YPB|1|YA|U|67
4YPB|1|YA|G|68
4YPB|1|YA|C|69
4YPB|1|YA|G|70
4YPB|1|YA|A|71
4YPB|1|YA|U|72
4YPB|1|YA|A|73
4YPB|1|YA|A|74
4YPB|1|YA|G|75
4YPB|1|YA|C|76
*
4YPB|1|YA|G|110
4YPB|1|YA|A|111
4YPB|1|YA|U|112
4YPB|1|YA|G|113
4YPB|1|YA|U|114
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y2
- 50S ribosomal protein L29
- Chain Y7
- 50S ribosomal protein L34
- Chain YX
- 50S ribosomal protein L23
Coloring options: