IL_4YPB_375

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

4YPB|1|YA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_375 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.1977

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4YPB|1|YA|G|879
4YPB|1|YA|G|880
4YPB|1|YA|G|881
*
4YPB|1|YA|U|895
4YPB|1|YA|A|896
4YPB|1|YA|C|897
4YPB|1|YA|C|898

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25