IL_4YPB_382

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YPB_382 not in the Motif Atlas

Homologous match to IL_9DFE_348

Geometric discrepancy: 0.0978

The information below is about IL_9DFE_348

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

4YPB|1|RA|G|42
4YPB|1|RA|A|43
*
4YPB|1|RA|U|434
4YPB|1|RA|C|435
4YPB|1|RA|C|436

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34