3D structure

PDB id
4YY3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S ribosomal subunit- HigB complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YY3_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0528
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4YY3|1|A|G|887
4YY3|1|A|G|888
4YY3|1|A|A|889
4YY3|1|A|G|890
4YY3|1|A|U|891
4YY3|1|A|A|892
4YY3|1|A|C|893
4YY3|1|A|G|894
*
4YY3|1|A|U|905
4YY3|1|A|G|906
4YY3|1|A|A|907
4YY3|1|A|A|908
4YY3|1|A|A|909
4YY3|1|A|C|910

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12

Coloring options:


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