IL_4YY3_060

3D structure

PDB id

4YY3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit- HigB complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4YY3|1|A|G|1443, 4YY3|1|A|A|1446

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YY3_060 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.3108

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4YY3|1|A|C|1440
4YY3|1|A|G|1441
4YY3|1|A|G|1442
4YY3|1|A|G|1443
4YY3|1|A|A|1446
4YY3|1|A|G|1447
*
4YY3|1|A|C|1459
4YY3|1|A|A|1460
4YY3|1|A|G|1461

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20