IL_4YZV_020

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_020 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1024

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4YZV|1|QA|G|450
4YZV|1|QA|A|451
4YZV|1|QA|A|452
4YZV|1|QA|A|453
4YZV|1|QA|C|454
4YZV|1|QA|C|455
*
4YZV|1|QA|G|477
4YZV|1|QA|A|478
4YZV|1|QA|C|479
4YZV|1|QA|U|480
4YZV|1|QA|G|481
4YZV|1|QA|A|482
4YZV|1|QA|C|483

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16