IL_4YZV_065

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CUCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_065 not in the Motif Atlas

Geometric match to IL_4V9F_003

Geometric discrepancy: 0.2881

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

4YZV|1|RA|G|43
4YZV|1|RA|A|44
4YZV|1|RA|G|45
*
4YZV|1|RA|C|433
4YZV|1|RA|U|434
4YZV|1|RA|C|435
4YZV|1|RA|C|436

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34