IL_4YZV_143
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 4YZV|1|RA|C|2055, 4YZV|1|RA|C|2612, 4YZV|1|RA|U|2613, 4YZV|1|RA|A|2614
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YZV_143 not in the Motif Atlas
- Homologous match to IL_7RQB_079
- Geometric discrepancy: 0.0588
- The information below is about IL_7RQB_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01206.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4YZV|1|RA|A|2054
4YZV|1|RA|C|2055
4YZV|1|RA|G|2056
4YZV|1|RA|A|2057
*
4YZV|1|RA|U|2611
4YZV|1|RA|C|2612
4YZV|1|RA|U|2613
4YZV|1|RA|A|2614
4YZV|1|RA|U|2615
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RE
- 50S ribosomal protein L3
- Chain RW
- 50S ribosomal protein L22
Coloring options: