IL_4YZV_188

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4YZV|1|XA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_188 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0649

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4YZV|1|XA|G|148
4YZV|1|XA|A|149
4YZV|1|XA|C|150
4YZV|1|XA|A|151
4YZV|1|XA|A|152
4YZV|1|XA|C|153
*
4YZV|1|XA|G|168
4YZV|1|XA|C|169
4YZV|1|XA|U|170
4YZV|1|XA|A|171
4YZV|1|XA|A|172
4YZV|1|XA|U|173
4YZV|1|XA|C|174

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20