3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YZV_206 not in the Motif Atlas
Homologous match to IL_4LFB_027
Geometric discrepancy: 0.0605
The information below is about IL_4LFB_027
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_74641.1
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
32

Unit IDs

4YZV|1|XA|G|654
4YZV|1|XA|A|655
*
4YZV|1|XA|U|751
4YZV|1|XA|G|752
4YZV|1|XA|A|753
4YZV|1|XA|C|754

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XH
30S ribosomal protein S8
Chain XO
30S ribosomal protein S15

Coloring options:


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