IL_4YZV_210
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4YZV|1|XA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YZV_210 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.0971
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4YZV|1|XA|G|683
4YZV|1|XA|A|684
4YZV|1|XA|G|685
4YZV|1|XA|U|686
4YZV|1|XA|A|687
4YZV|1|XA|G|688
*
4YZV|1|XA|C|699
4YZV|1|XA|G|700
4YZV|1|XA|C|701
4YZV|1|XA|A|702
4YZV|1|XA|G|703
4YZV|1|XA|A|704
4YZV|1|XA|U|705
4YZV|1|XA|A|706
4YZV|1|XA|C|707
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XK
- 30S ribosomal protein S11
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: