IL_4YZV_226

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_226 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3411

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4YZV|1|XA|U|1122
4YZV|1|XA|A|1123
4YZV|1|XA|G|1124
*
4YZV|1|XA|C|1149
4YZV|1|XA|U|1150
4YZV|1|XA|A|1151

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10