IL_4YZV_227

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

4YZV|1|XA|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_227 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.3252

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4YZV|1|XA|G|1124
4YZV|1|XA|U|1125
4YZV|1|XA|U|1126
4YZV|1|XA|G|1127
*
4YZV|1|XA|C|1145
4YZV|1|XA|A|1146
4YZV|1|XA|C|1147
4YZV|1|XA|U|1148
4YZV|1|XA|C|1149

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10