IL_4YZV_349

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

4YZV|1|YA|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_349 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.0819

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

4YZV|1|YA|C|2695
4YZV|1|YA|U|2696
*
4YZV|1|YA|A|2711
4YZV|1|YA|U|2712
4YZV|1|YA|A|2712|||A
4YZV|1|YA|A|2713
4YZV|1|YA|G|2714

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17

Chain YT

50S ribosomal protein L19