IL_4YZV_386

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_386 not in the Motif Atlas

Homologous match to IL_4WF9_126

Geometric discrepancy: 0.1845

The information below is about IL_4WF9_126

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

4YZV|1|RB|C|30
4YZV|1|RB|C|31
*
4YZV|1|RB|G|51
4YZV|1|RB|A|52
4YZV|1|RB|A|53
4YZV|1|RB|G|54

Current chains

Chain RB

5S rRNA

Nearby chains

Chain RG

50S ribosomal protein L5

Chain RS

50S ribosomal protein L18