IL_4Z3S_084

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z3S_084 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3512

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4Z3S|1|1A|G|2124
4Z3S|1|1A|G|2125
4Z3S|1|1A|A|2126
4Z3S|1|1A|G|2127
*
4Z3S|1|1A|C|2161
4Z3S|1|1A|G|2162
4Z3S|1|1A|C|2163
4Z3S|1|1A|C|2164
4Z3S|1|1A|G|2165
4Z3S|1|1A|G|2166
4Z3S|1|1A|U|2167
4Z3S|1|1A|G|2168
4Z3S|1|1A|A|2169
4Z3S|1|1A|A|2170
4Z3S|1|1A|A|2171
4Z3S|1|1A|U|2172
4Z3S|1|1A|A|2173
4Z3S|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA