IL_4Z3S_101

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z3S_101 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.062

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4Z3S|1|1A|C|2652
4Z3S|1|1A|U|2653
4Z3S|1|1A|A|2654
4Z3S|1|1A|G|2655
4Z3S|1|1A|U|2656
4Z3S|1|1A|A|2657
4Z3S|1|1A|C|2658
*
4Z3S|1|1A|G|2663
4Z3S|1|1A|G|2664
4Z3S|1|1A|A|2665
4Z3S|1|1A|C|2666
4Z3S|1|1A|C|2667
4Z3S|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6