IL_4Z3S_321

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z3S_321 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0698

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4Z3S|1|2a|G|887
4Z3S|1|2a|G|888
4Z3S|1|2a|A|889
4Z3S|1|2a|G|890
4Z3S|1|2a|U|891
4Z3S|1|2a|A|892
4Z3S|1|2a|C|893
4Z3S|1|2a|G|894
*
4Z3S|1|2a|U|905
4Z3S|1|2a|G|906
4Z3S|1|2a|A|907
4Z3S|1|2a|A|908
4Z3S|1|2a|A|909
4Z3S|1|2a|C|910

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17