IL_4Z8C_151

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_151 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.22

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4Z8C|1|1a|G|971
4Z8C|1|1a|A|972
4Z8C|1|1a|C|973
4Z8C|1|1a|A|974
4Z8C|1|1a|U|975
*
4Z8C|1|1a|A|1027
4Z8C|1|1a|C|1028

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1n

30S ribosomal protein S14 type Z