IL_4Z8C_173

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4Z8C|1|1a|G|1426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_173 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.3369

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

4Z8C|1|1a|C|1423
4Z8C|1|1a|G|1424
4Z8C|1|1a|G|1425
4Z8C|1|1a|G|1426
4Z8C|1|1a|A|1427
4Z8C|1|1a|G|1428
*
4Z8C|1|1a|C|1437
4Z8C|1|1a|A|1438
4Z8C|1|1a|G|1439

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1T

50S ribosomal protein L19

Chain 1t

30S ribosomal protein S20