IL_4Z8C_216

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGC*GCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCGC,GCGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_216 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2053

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4Z8C|1|2A|G|1082
4Z8C|1|2A|C|1083
4Z8C|1|2A|G|1084
4Z8C|1|2A|C|1085
*
4Z8C|1|2A|G|1160
4Z8C|1|2A|C|1161
4Z8C|1|2A|G|1162
4Z8C|1|2A|C|1163

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25