IL_4Z8C_218

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4Z8C|1|2A|A|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_218 not in the Motif Atlas

Geometric match to IL_5J7L_284

Geometric discrepancy: 0.2565

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4Z8C|1|2A|C|1088
4Z8C|1|2A|G|1089
4Z8C|1|2A|A|1090
4Z8C|1|2A|A|1091
4Z8C|1|2A|G|1092
4Z8C|1|2A|A|1093
4Z8C|1|2A|C|1094
4Z8C|1|2A|A|1095
4Z8C|1|2A|G|1096
*
4Z8C|1|2A|U|1153
4Z8C|1|2A|C|1154
4Z8C|1|2A|G|1155
4Z8C|1|2A|A|1156
4Z8C|1|2A|G|1157

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6