IL_4Z8C_224

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4Z8C|1|2A|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_224 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0564

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4Z8C|1|2A|C|1252
4Z8C|1|2A|G|1253
4Z8C|1|2A|A|1254
4Z8C|1|2A|U|1255
4Z8C|1|2A|G|1256
4Z8C|1|2A|A|1257
4Z8C|1|2A|A|1258
4Z8C|1|2A|G|1259
*
4Z8C|1|2A|U|1279
4Z8C|1|2A|G|1280
4Z8C|1|2A|G|1281
4Z8C|1|2A|A|1282
4Z8C|1|2A|G|1283

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20