IL_4Z8C_234

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

4Z8C|1|2A|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_234 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0763

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4Z8C|1|2A|C|1482
4Z8C|1|2A|U|1483
4Z8C|1|2A|A|1484
4Z8C|1|2A|G|1485
*
4Z8C|1|2A|C|1597
4Z8C|1|2A|G|1598
4Z8C|1|2A|A|1599
4Z8C|1|2A|A|1600
4Z8C|1|2A|G|1601

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains