IL_4Z8C_240

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4Z8C|1|2A|C|1589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_240 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0728

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4Z8C|1|2A|G|1571
4Z8C|1|2A|G|1572
4Z8C|1|2A|A|1573
4Z8C|1|2A|A|1574
4Z8C|1|2A|G|1575
*
4Z8C|1|2A|U|1586
4Z8C|1|2A|G|1587
4Z8C|1|2A|A|1588
4Z8C|1|2A|C|1589
4Z8C|1|2A|A|1590
4Z8C|1|2A|A|1591
4Z8C|1|2A|C|1592

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains