IL_4Z8C_244

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4Z8C|1|2A|G|2013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_244 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.0645

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4Z8C|1|2A|A|1715
4Z8C|1|2A|C|1716
4Z8C|1|2A|U|1717
4Z8C|1|2A|C|1718
4Z8C|1|2A|U|1719
4Z8C|1|2A|G|1720
*
4Z8C|1|2A|C|2011
4Z8C|1|2A|U|2012
4Z8C|1|2A|G|2013
4Z8C|1|2A|U|2014

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14