IL_4Z8C_276

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4Z8C|1|2A|G|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_276 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0412

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4Z8C|1|2A|U|2647
4Z8C|1|2A|U|2648
4Z8C|1|2A|G|2649
4Z8C|1|2A|A|2650
4Z8C|1|2A|G|2651
*
4Z8C|1|2A|C|2786
4Z8C|1|2A|A|2787
4Z8C|1|2A|A|2788
4Z8C|1|2A|G|2789
4Z8C|1|2A|A|2790
4Z8C|1|2A|U|2791
4Z8C|1|2A|G|2792
4Z8C|1|2A|A|2793
4Z8C|1|2A|G|2794

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13