IL_4Z8C_284

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_284 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0557

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4Z8C|1|2A|U|2856
4Z8C|1|2A|G|2857
4Z8C|1|2A|U|2858
4Z8C|1|2A|A|2859
4Z8C|1|2A|A|2860
4Z8C|1|2A|G|2861
*
4Z8C|1|2A|U|2874
4Z8C|1|2A|U|2875
4Z8C|1|2A|G|2876
4Z8C|1|2A|A|2877
4Z8C|1|2A|G|2878

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19