IL_4Z8C_324

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_324 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0644

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4Z8C|1|2a|G|865
4Z8C|1|2a|G|866
4Z8C|1|2a|A|867
4Z8C|1|2a|G|868
4Z8C|1|2a|U|869
4Z8C|1|2a|A|870
4Z8C|1|2a|C|871
4Z8C|1|2a|G|872
*
4Z8C|1|2a|U|883
4Z8C|1|2a|G|884
4Z8C|1|2a|A|885
4Z8C|1|2a|A|886
4Z8C|1|2a|A|887
4Z8C|1|2a|C|888

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17