3D structure

PDB id
4Z8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GUUG*CACUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4Z8C_337 not in the Motif Atlas
Homologous match to IL_6CZR_158
Geometric discrepancy: 0.1801
The information below is about IL_6CZR_158
Detailed Annotation
Minor groove platform
Broad Annotation
Minor groove platform
Motif group
IL_40144.1
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

4Z8C|1|2a|G|1107
4Z8C|1|2a|U|1108
4Z8C|1|2a|U|1109
4Z8C|1|2a|G|1110
*
4Z8C|1|2a|C|1128
4Z8C|1|2a|A|1129
4Z8C|1|2a|C|1130
4Z8C|1|2a|U|1131
4Z8C|1|2a|C|1132

Current chains

Chain 2a
16S ribosomal RNA

Nearby chains

Chain 2i
30S ribosomal protein S9
Chain 2j
30S ribosomal protein S10

Coloring options:


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