IL_4Z8C_341

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4Z8C|1|2a|U|1239, 4Z8C|1|2a|A|1262, 4Z8C|1|2a|U|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_341 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1977

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4Z8C|1|2a|G|1237
4Z8C|1|2a|A|1238
4Z8C|1|2a|U|1239
4Z8C|1|2a|G|1240
*
4Z8C|1|2a|C|1259
4Z8C|1|2a|U|1260
4Z8C|1|2a|A|1261
4Z8C|1|2a|A|1262
4Z8C|1|2a|U|1263
4Z8C|1|2a|C|1264

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z