IL_4Z8C_344

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4Z8C|1|2a|C|1383, 4Z8C|1|2a|A|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_344 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2065

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4Z8C|1|2a|C|1382
4Z8C|1|2a|C|1383
4Z8C|1|2a|G|1384
*
4Z8C|1|2a|C|1479
4Z8C|1|2a|A|1480
4Z8C|1|2a|A|1481
4Z8C|1|2a|G|1482

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2e

30S ribosomal protein S5

Chain 2v

mRNA

Chain 2x

Transfer RNA; tRNA