IL_4Z8C_356

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCG*UGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_356 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2027

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4Z8C|1|1a|C|181
4Z8C|1|1a|C|182
4Z8C|1|1a|C|183
4Z8C|1|1a|G|184
*
4Z8C|1|1a|U|195
4Z8C|1|1a|G|196
4Z8C|1|1a|U|197
4Z8C|1|1a|G|198

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20