IL_4Z8C_359

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4Z8C|1|2A|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_359 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.0958

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4Z8C|1|2A|C|890
4Z8C|1|2A|G|891
4Z8C|1|2A|C|892
4Z8C|1|2A|U|893
4Z8C|1|2A|G|894
4Z8C|1|2A|A|895
4Z8C|1|2A|C|896
*
4Z8C|1|2A|G|972
4Z8C|1|2A|G|973
4Z8C|1|2A|U|974
4Z8C|1|2A|G|975
4Z8C|1|2A|G|976
4Z8C|1|2A|A|977
4Z8C|1|2A|G|978

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30