IL_4ZER_010

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4ZER|1|1A|A|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_010 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.0855

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4ZER|1|1A|C|304
4ZER|1|1A|G|305
4ZER|1|1A|A|306
4ZER|1|1A|A|307
4ZER|1|1A|U|308
*
4ZER|1|1A|A|381
4ZER|1|1A|U|382
4ZER|1|1A|A|383
4ZER|1|1A|G|384

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains